About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47648ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides47649PROTEIN ZERKNUELLT 1-RELATED
Paelopatides47650BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2
Paelopatides47651PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides47652BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2
Paelopatides47653PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides47654-
Paelopatides47655-
Paelopatides47656PROTEIN LIN-7 HOMOLOG
Paelopatides47657UNCHARACTERIZED
Paelopatides47658TRANSPOSABLE ELEMENT-RELATED
Paelopatides47659NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED
Paelopatides47660ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides47661-
Paelopatides47662TRANSLATION FACTOR
Paelopatides47663-
Paelopatides47664GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
Paelopatides47665WASH COMPLEX SUBUNIT 5
Paelopatides47666WASH COMPLEX SUBUNIT 5
Paelopatides47667PROTEIN CBG26694
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