About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47668E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
Paelopatides47669-
Paelopatides47670DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides47671IGGFC_BINDING DOMAIN-CONTAINING PROTEIN
Paelopatides47672FI04643P-RELATED
Paelopatides47673RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides47674-
Paelopatides47675TYROSINE-PROTEIN KINASE
Paelopatides47676BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED
Paelopatides47677FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides47678TYROSINE-PROTEIN KINASE
Paelopatides47679-
Paelopatides47680REVERSE TRANSCRIPTASES
Paelopatides47681TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides47682ZINC FINGER PROTEIN ZIC AND GLI
Paelopatides47684-
Paelopatides47685PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides47686SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47687CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47688ENZYMATIC POLYPROTEIN-RELATED
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