About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47626PROTEIN CBG26694
Paelopatides47627MACROGLOBULIN / COMPLEMENT
Paelopatides47628-
Paelopatides47629FORKHEAD BOX PROTEIN O
Paelopatides47630NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides47633INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides47634INTERFERON ALPHA-INDUCIBLE PROTEIN 27
Paelopatides47635INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47636PROTEIN CBG26694
Paelopatides47637-
Paelopatides47638-
Paelopatides47639-
Paelopatides47640-
Paelopatides47641PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
Paelopatides47642NADP-SPECIFIC ISOCITRATE DEHYDROGENASE
Paelopatides47643NADP-SPECIFIC ISOCITRATE DEHYDROGENASE
Paelopatides47644PR DOMAIN ZINC FINGER PROTEIN
Paelopatides47645REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides47646BUCENTAUR RELATED
Paelopatides47647BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
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