About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides47606CUE DOMAIN CONTAINING PROTEIN 1
Paelopatides47607PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides47608CELL CYCLE CHECKPOINT PROTEIN RAD1
Paelopatides47609NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides47610RETROTRANSPOSON
Paelopatides47611PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides47612UNCHARACTERIZED
Paelopatides47613SOLUTE CARRIER FAMILY 25 MEMBER 44
Paelopatides47614CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7
Paelopatides47615-
Paelopatides47616-
Paelopatides4761726S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2
Paelopatides47618FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides47619FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides47620-
Paelopatides47621CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides47622-
Paelopatides47623EXODEOXYRIBONUCLEASE III
Paelopatides4762415-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Paelopatides47625-
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