About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46790NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides46791-
Paelopatides46792ASAP FAMILY MEMBER
Paelopatides46793PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Paelopatides46794ASAP FAMILY MEMBER
Paelopatides46795SER/THR PROTEIN KINASE-TRB
Paelopatides46796TRANSLATION FACTOR
Paelopatides46797PROTEIN KINASE PKN/PRK1, EFFECTOR
Paelopatides46798-
Paelopatides46799PROTEIN KINASE PKN/PRK1, EFFECTOR
Paelopatides46800-
Paelopatides46804-
Paelopatides46805FI04643P-RELATED
Paelopatides46806AMINO ACID TRANSPORTER
Paelopatides46807ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides46808AMINO ACID TRANSPORTER
Paelopatides46809-
Paelopatides46810PROTEIN CBG26694
Paelopatides46811PROTEIN CBG26694
Paelopatides46812AMINO ACID TRANSPORTER
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