About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46770-
Paelopatides46771ESOPHAGEAL CANCER ASSOCIATED PROTEIN
Paelopatides46772PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides46773-
Paelopatides46774NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
Paelopatides46775-
Paelopatides46776CALBINDIN
Paelopatides46777FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46778-
Paelopatides46779-
Paelopatides46780-
Paelopatides46781-
Paelopatides46782PROTEIN CBG26694
Paelopatides46783-
Paelopatides46784CHROMOBOX PROTEIN
Paelopatides46785THAP DOMAIN PROTEIN
Paelopatides46786-
Paelopatides46787CYCLIN D1-BINDING PROTEIN 1
Paelopatides46788-
Paelopatides46789REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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