About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46649SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides46650CHROMO DOMAIN-CONTAINING PROTEIN LHP1
Paelopatides46651ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides46652CASPASE-ACTIVATED DNASE
Paelopatides46653-
Paelopatides46654-
Paelopatides46655G-PROTEIN COUPLED RECEPTOR
Paelopatides46656LD33804P
Paelopatides46657-
Paelopatides46658KELCH PROTEIN
Paelopatides46659SERINE/THREONINE-PROTEIN KINASE ATM
Paelopatides46660FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides46661MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER
Paelopatides46662-
Paelopatides46663VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG
Paelopatides46664-
Paelopatides46665-
Paelopatides46666-
Paelopatides46667-
Paelopatides46668COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
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