About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46689PROTEIN CBG26694
Paelopatides46690RETROTRANSPOSON
Paelopatides46691RETROTRANSPOSON
Paelopatides46692-
Paelopatides46693SI:CH211-196P9.1-RELATED
Paelopatides46694-
Paelopatides46695ENDONUCLEASE-RELATED
Paelopatides46696-
Paelopatides46697-
Paelopatides46698NETRIN RECEPTOR UNC5
Paelopatides46699UNCHARACTERIZED
Paelopatides46700-
Paelopatides46701LATROPHILIN RECEPTOR-LIKE PROTEIN A
Paelopatides46702PROTEIN CBG26694
Paelopatides46703ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1
Paelopatides46704ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides46705-
Paelopatides46706POL PROTEIN
Paelopatides46707PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides46708PROTEIN CBG26694
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