About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46750-
Paelopatides46751NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1
Paelopatides46752SCAVENGER RECEPTOR DOMAIN-CONTAINING
Paelopatides46753EGALITARIAN, ISOFORM B
Paelopatides46754-
Paelopatides46755BICAUDAL D FAMILY MEMBER
Paelopatides46756BICAUDAL D FAMILY MEMBER
Paelopatides46757-
Paelopatides46758MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides46759FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46760FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46761PROTEIN CBG26694
Paelopatides46762BAND 7 PROTEIN-RELATED
Paelopatides46763LIPASE
Paelopatides46764HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED
Paelopatides46765ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides46766NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides46767PROTEIN CBG23806
Paelopatides46768-
Paelopatides46769-
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