About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46585-
Paelopatides46586ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides46587CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides46588ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
Paelopatides46591ENDONUCLEASE V
Paelopatides46592ENDONUCLEASE V
Paelopatides46593DYNEIN LIGHT CHAIN
Paelopatides46594BONUS, ISOFORM C-RELATED
Paelopatides46595REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides46596BONUS, ISOFORM C-RELATED
Paelopatides46597BONUS, ISOFORM C-RELATED
Paelopatides46598EPM2A-INTERACTING PROTEIN 1
Paelopatides46599TRANSPOSON
Paelopatides46600GAG-RELATED PROTEIN
Paelopatides46601-
Paelopatides46602CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides46603-
Paelopatides46604-
Paelopatides46605-
Paelopatides46606GAG-RELATED PROTEIN
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