About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46544-
Paelopatides46545-
Paelopatides46546SI:DKEY-256H2.1
Paelopatides46547-
Paelopatides46548FACTOR VIII-ASSOCIATED GENE 1
Paelopatides46549FORMIN HOMOLOGY 2 FAMILY MEMBER
Paelopatides46550ATP-CITRATE SYNTHASE
Paelopatides46551PROSTAGLANDIN REDUCTASE
Paelopatides46552PROTEIN SIDEKICK
Paelopatides46553-
Paelopatides46554UBIQUITIN DOMAIN-CONTAINING PROTEIN UBFD1
Paelopatides46555SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides46556RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
Paelopatides46557KETOACID-COENZYME A TRANSFERASE
Paelopatides46558-
Paelopatides46559MULTICOPPER OXIDASE-RELATED
Paelopatides4656052 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides46561GTP-BINDING
Paelopatides46562-
Paelopatides46563DNA-DIRECTED RNA POLYMERASE
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