About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46835TRANSPOSON
Paelopatides46836PROTEIN FAM221A-RELATED
Paelopatides46837-
Paelopatides46838PROTEIN CBG26694
Paelopatides46839PROTEIN CBG26694
Paelopatides46840-
Paelopatides46841TRANSPOSABLE ELEMENT-RELATED
Paelopatides46842-
Paelopatides46843-
Paelopatides46844N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides46845ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides46846ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides46847-
Paelopatides46848RAS GTPASE-ACTIVATING PROTEINS
Paelopatides46849BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY
Paelopatides46850RAGULATOR COMPLEX PROTEIN LAMTOR4
Paelopatides46851PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS W PROTEIN
Paelopatides46852POLYCOMB GROUP PROTEIN
Paelopatides46853-
Paelopatides46854-
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