About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46855SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides46857-
Paelopatides46858CORNICHON-RELATED
Paelopatides46859SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED
Paelopatides46860RETROTRANSPOSON
Paelopatides46861PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides46862FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides46863-
Paelopatides46864GEM-ASSOCIATED PROTEIN 6
Paelopatides46865-
Paelopatides46866-
Paelopatides46867-
Paelopatides46868CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides46869-
Paelopatides46870GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides46871PROTEIN CBG26694
Paelopatides46872-
Paelopatides46873ENDONUCLEASE-RELATED
Paelopatides46878MACROGLOBULIN / COMPLEMENT
Paelopatides46879MACROGLOBULIN / COMPLEMENT
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