About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides46880NETRIN RECEPTOR UNC5
Paelopatides46885ENDONUCLEASE
Paelopatides46886-
Paelopatides46887CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides46888-
Paelopatides46889CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides46890REVERSE TRANSCRIPTASE
Paelopatides46891DEOXYRIBONUCLEASE II
Paelopatides46892DEOXYRIBONUCLEASE II
Paelopatides46893CDC73 DOMAIN PROTEIN
Paelopatides46894HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides46895CDC73 DOMAIN PROTEIN
Paelopatides46896-
Paelopatides46897GLYCOGEN SYNTHASE
Paelopatides46898SUSHI DOMAIN-CONTAINING PROTEIN 1
Paelopatides46899BUCENTAUR RELATED
Paelopatides46900-
Paelopatides46901ANDROGLOBIN
Paelopatides46902PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides46903-
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