The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama14530 | |
Ama14532 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama14534 | CONTACTIN 5 |
Ama14535 | |
Ama14538 | |
Ama14540 | UNCHARACTERIZED |
Ama14541 | INTIMAL THICKNESS RECEPTOR-RELATED |
Ama14546 | |
Ama14547 | |
Ama14551 | |
Ama14552 | |
Ama14553 | |
Ama14556 | TIMEOUT/TIMELESS-2 |
Ama14557 | PRE-MRNA-SPLICING FACTOR CWF18 |
Ama14559 | |
Ama14560 | |
Ama14561 | DUAL SPECIFICITY PROTEIN KINASE |
Ama14563 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama14564 | TRANSMEMBRANE PROTEIN 192 |
Ama14567 | |
Ama14568 | |
Ama14569 | GUANYLYL CYCLASE |
Ama14570 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama14571 | AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE |
Ama14572 | |
Ama14573 | |
Ama14574 | PUTATIVE-RELATED |
Ama14575 | ATP-DEPENDENT DNA HELICASE |
Ama14576 | THAP DOMAIN PROTEIN |
Ama14577 | STEROL DESATURASE |
Ama14578 | 40S RIBOSOMAL PROTEIN S19 |
Ama14581 | |
Ama14582 | BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN |
Ama14583 | - |
Ama14584 | TRANSPOSON |
Ama14585 | GUANYLYL CYCLASE |
Ama14586 | SLEI FAMILY PROTEIN |
Ama14589 | |
Ama14596 | VOLTAGE-GATED POTASSIUM CHANNEL |
Ama14597 | |
Ama14598 | |
Ama14599 | COATOMER SUBUNIT DELTA |
Ama145_5db7b01a | |
Ama14604 | RFX TRANSCRIPTION FACTOR FAMILY |
Ama14607 | TRANSPOSON |
Ama14609 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
Ama14610 | GLYCOSIDASE FAMILY 31 |
Ama14611 | MULTICOPPER OXIDASE-RELATED |
Ama14612 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama14613 | INHIBITOR OF APOPTOSIS |