About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361 Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama14269XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Ama14271CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Ama14272
Ama14276MOLYBDOPTERIN COFACTOR SULFURASE MOSC
Ama14277HOMEOBOX PROTEIN CDX
Ama14280PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama142813-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN
Ama14282
Ama14283ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Ama14284
Ama14285DNA2/NAM7 HELICASE FAMILY MEMBER
Ama14287
Ama14288
Ama14293ANGIOTENSIN-CONVERTING ENZYME
Ama14295REVERSE TRANSCRIPTASES
Ama14297
Ama14298DEOXYRIBONUCLEASE TATDN2-RELATED
Ama142_5db7b01aSH2-SH3 ADAPTOR PROTEIN-RELATED
Ama14300DEOXYRIBONUCLEASE TATDN2-RELATED
Ama14301ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Ama14302TRANSPOSABLE ELEMENT-RELATED
Ama14303PLACENTAL PROTEIN 6
Ama14304PLACENTAL PROTEIN 6
Ama14305COLLAGEN ALPHA
Ama14306
Ama14307SI:CH211-266K2.1
Ama14308COLLAGEN ALPHA
Ama14309DUF4291 DOMAIN-CONTAINING PROTEIN
Ama14310DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama14311ZINC FINGER AND SCAN DOMAIN-CONTAINING
Ama14312
Ama14314WD REPEAT DOMAIN-CONTAINING FAMILY
Ama14316NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT
Ama14321CGI-41 METHYLTRANSFERASE
Ama14324SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT
Ama14325
Ama14326CYSTATHIONINE BETA-SYNTHASE
Ama14327GAMMA-SECRETASE SUBUNIT PEN-2
Ama14329U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
Ama14330GAMMA-SECRETASE SUBUNIT PEN-2
Ama14331PERSULFIDE DIOXYGENASE ETHE1
Ama14333
Ama14334ANAPHASE-PROMOTING COMPLEX SUBUNIT 13
Ama14335
Ama14336CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama14337
Ama14338
Ama14339PROTEIN CBG10425
Ama14340PROTEIN CBG10425
Ama14341INTEGRASE CORE DOMAIN CONTAINING PROTEIN
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