Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_24966-7.9 | NUCLEAR RNA EXPORT FACTOR |
| Bpl_scaf_24966-8.17 | TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE |
| Bpl_scaf_24966-8.4 | ALPHA-PROTEIN KINASE VWKA |
| Bpl_scaf_24966-8.9 | LEUCINE-RICH REPEAT-CONTAINING |
| Bpl_scaf_24974-0.0 | |
| Bpl_scaf_24975-0.1 | |
| Bpl_scaf_24975-1.10 | KAZRIN-RELATED |
| Bpl_scaf_24975-1.19 | RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE |
| Bpl_scaf_24975-1.3 | RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE |
| Bpl_scaf_24975-1.9 | WD40 REPEAT PROTEIN |
| Bpl_scaf_24984-1.8 | F20B24.22 |
| Bpl_scaf_24993-0.0 | |
| Bpl_scaf_24995-1.28 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_24995-1.29 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_24995-1.48 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_24995-1.49 | METABOTROPIC GLUTAMATE RECEPTOR |
| Bpl_scaf_24996-10.1 | GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE |
| Bpl_scaf_24996-10.2 | TETRASPANIN |
| Bpl_scaf_24996-11.4 | PHOSPHOLIPASE D - RELATED |
| Bpl_scaf_24996-11.5 | |
| Bpl_scaf_24996-12.11 | LD44762P |
| Bpl_scaf_24996-12.8 | CONSORTIN |
| Bpl_scaf_24996-13.0 | |
| Bpl_scaf_24996-13.1 | VACUOLAR PROTEIN SORTING VPS16 |
| Bpl_scaf_24996-14.0 | |
| Bpl_scaf_24996-14.1 | |
| Bpl_scaf_24996-14.3 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_24996-15.0 | |
| Bpl_scaf_24996-15.4 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Bpl_scaf_24996-15.7 | DYNEIN ASSEMBLY FACTOR 3, AXONEMAL |
| Bpl_scaf_24996-16.10 | CWF19, CELL CYCLE CONTROL PROTEIN |
| Bpl_scaf_24996-16.3 | |
| Bpl_scaf_24996-16.5 | |
| Bpl_scaf_24996-16.9 | |
| Bpl_scaf_24996-17.6 | ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 12 |
| Bpl_scaf_24996-17.7 | DAMAGE-SPECIFIC DNA BINDING PROTEIN 2 |
| Bpl_scaf_24996-18.17 | ADP RIBOSYLATION FACTOR-RELATED |
| Bpl_scaf_24996-18.4 | ZINC FINGER PROTEIN |
| Bpl_scaf_24996-18.8 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
| Bpl_scaf_24996-18.9 | TRIOSEPHOSPHATE ISOMERASE |
| Bpl_scaf_24996-2.21 | GLYCOSYL HYDROLASE-RELATED |
| Bpl_scaf_24996-2.25 | GLUTAREDOXIN FAMILY MEMBER |
| Bpl_scaf_24996-2.30 | RPE-SPONDIN |
| Bpl_scaf_24996-2.31 | RPE-SPONDIN |
| Bpl_scaf_24996-2.32 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Bpl_scaf_24996-2.34 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Bpl_scaf_24996-3.6 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Bpl_scaf_24996-3.7 | SEROLOGICALLY DEFINED COLON CANCER ANTIGEN 8 |
| Bpl_scaf_24996-4.16 | |
| Bpl_scaf_24996-4.17 | AFTIPHILIN A-RELATED |
