Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_24460-0.2 | |
| Bpl_scaf_24461-0.0 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_24462-0.3 | PERIOSTIN-RELATED |
| Bpl_scaf_24463-0.0 | |
| Bpl_scaf_24464-0.3 | |
| Bpl_scaf_24464-0.4 | |
| Bpl_scaf_24465-0.6 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Bpl_scaf_24465-1.6 | UNCHARACTERIZED |
| Bpl_scaf_24465-2.10 | |
| Bpl_scaf_24465-2.15 | SIDESTEP PROTEIN |
| Bpl_scaf_24465-2.2 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_24465-2.6 | |
| Bpl_scaf_24465-3.10 | CYTOCHROME P450 FAMILY 3 |
| Bpl_scaf_24465-3.11 | |
| Bpl_scaf_24465-3.13 | THIOESTERASE |
| Bpl_scaf_24465-3.4 | |
| Bpl_scaf_24465-3.5 | |
| Bpl_scaf_24466-1.1 | MACROPHAGE-EXPRESSED GENE 1 PROTEIN |
| Bpl_scaf_24466-1.4 | ARRESTIN |
| Bpl_scaf_24466-10.0 | |
| Bpl_scaf_24466-11.11 | SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT |
| Bpl_scaf_24466-11.12 | RYANODINE RECEPTOR AND IP3 RECEPTOR |
| Bpl_scaf_24466-12.6 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_24466-2.1 | |
| Bpl_scaf_24466-2.4 | |
| Bpl_scaf_24466-2.5 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
| Bpl_scaf_24466-3.2 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Bpl_scaf_24466-3.7 | ATILLA, ISOFORM B-RELATED-RELATED |
| Bpl_scaf_24466-4.10 | |
| Bpl_scaf_24466-4.11 | FIBRILLIN-RELATED |
| Bpl_scaf_24466-4.12 | CLE |
| Bpl_scaf_24466-5.1 | |
| Bpl_scaf_24466-5.4 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
| Bpl_scaf_24466-6.11 | CRUMBS FAMILY MEMBER |
| Bpl_scaf_24466-7.3 | AGAP006772-PA |
| Bpl_scaf_24466-8.10 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Bpl_scaf_24466-8.8 | CELL CYCLE CONTROL PROTEIN CWF15 |
| Bpl_scaf_24466-8.9 | NF-KAPPA B ACTIVATING PROTEIN |
| Bpl_scaf_24466-9.2 | X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1 |
| Bpl_scaf_24479-0.4 | PHOSPHATIDYLINOSITOL GLYCAN, CLASS C |
| Bpl_scaf_24479-0.5 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
| Bpl_scaf_24479-1.4 | NMDA RECEPTOR SYNAPTONUCLEAR SIGNALING AND NEURONAL MIGRATION FACTOR |
| Bpl_scaf_24479-1.5 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 157 |
| Bpl_scaf_24479-2.11 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
| Bpl_scaf_24479-2.19 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
| Bpl_scaf_24479-2.20 | |
| Bpl_scaf_24479-2.7 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_24479-3.1 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
| Bpl_scaf_24479-3.3 | HEAT SHOCK PROTEIN HSP-12.2-RELATED |
| Bpl_scaf_24479-4.12 | THIOESTERASE |
