Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_24692-1.4 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_24692-1.6 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_24692-2.11 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Bpl_scaf_24692-2.12 | TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATED |
| Bpl_scaf_24692-2.13 | F-BOX ONLY PROTEIN 5 AND 43 |
| Bpl_scaf_24692-2.21 | DNA-DIRECTED RNA POLYMERASES I, II, AND III |
| Bpl_scaf_24692-2.22 | |
| Bpl_scaf_24692-4.10 | AUTOSOMAL HIGHLY CONSERVED PROTEIN |
| Bpl_scaf_24692-4.18 | REACTIVE OXYGEN SPECIES MODULATOR 1 |
| Bpl_scaf_24692-4.8 | COILED-COIL DOMAIN-CONTAINING PROTEIN 60 |
| Bpl_scaf_24692-4.9 | |
| Bpl_scaf_24692-5.0 | |
| Bpl_scaf_24692-5.6 | MRN COMPLEX-INTERACTING PROTEIN |
| Bpl_scaf_24692-5.7 | ANDROGEN-INDUCED PROTEIN 1-RELATED |
| Bpl_scaf_24692-5.8 | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE |
| Bpl_scaf_24692-5.9 | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN |
| Bpl_scaf_24697-0.14 | |
| Bpl_scaf_24697-0.3 | |
| Bpl_scaf_24697-0.7 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_24712-0.5 | |
| Bpl_scaf_24712-0.6 | |
| Bpl_scaf_24712-0.7 | LIM/HOMEOBOX PROTEIN LHX |
| Bpl_scaf_24728-0.6 | |
| Bpl_scaf_24746-0.16 | |
| Bpl_scaf_24746-0.17 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_24764-0.0 | FRIZZLED |
| Bpl_scaf_24764-0.13 | |
| Bpl_scaf_24780-0.5 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Bpl_scaf_24780-0.7 | |
| Bpl_scaf_24781-0.10 | RIKEN CDNA 9930021J03 GENE |
| Bpl_scaf_24781-0.11 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_24781-0.9 | |
| Bpl_scaf_24781-1.3 | BCL9 |
| Bpl_scaf_24781-2.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| Bpl_scaf_24781-3.13 | LEPRECAN 1 |
| Bpl_scaf_24781-3.17 | |
| Bpl_scaf_24781-3.3 | |
| Bpl_scaf_24781-3.32 | NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED |
| Bpl_scaf_24781-4.10 | SOLUTE CARRIER FAMILY 17 |
| Bpl_scaf_24781-4.8 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| Bpl_scaf_24781-4.9 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| Bpl_scaf_24781-5.12 | TETRASPANIN |
| Bpl_scaf_24781-5.28 | |
| Bpl_scaf_24781-5.29 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| Bpl_scaf_24781-5.30 | TYROSINASE FAMILY MEMBER |
| Bpl_scaf_24781-5.34 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_24781-5.35 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_24781-5.5 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_24783-0.7 | |
| Bpl_scaf_24783-0.8 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
