Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_24370-16.8 | UNCHARACTERIZED |
| Bpl_scaf_24370-17.1 | |
| Bpl_scaf_24370-17.13 | FLAP ENDONUCLEASE FAMILY MEMBER |
| Bpl_scaf_24370-17.14 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| Bpl_scaf_24370-17.15 | |
| Bpl_scaf_24370-17.21 | S-ANTIGEN PROTEIN |
| Bpl_scaf_24370-17.5 | |
| Bpl_scaf_24370-18.16 | MITOTIC AND DNA DAMAGE CHECKPOINT PROTEIN HUS1 |
| Bpl_scaf_24370-18.17 | IGLON FAMILY OF IMMUNOGLOBULIN SUPERFAMILY-RELATED |
| Bpl_scaf_24370-18.22 | NEPHRIN |
| Bpl_scaf_24370-18.4 | |
| Bpl_scaf_24370-2.3 | ETS |
| Bpl_scaf_24370-3.1 | |
| Bpl_scaf_24370-3.11 | |
| Bpl_scaf_24370-3.12 | ETS |
| Bpl_scaf_24370-4.0 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_24370-4.4 | CARBOHYDRATE SULFOTRANSFERASE 15 |
| Bpl_scaf_24370-5.6 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
| Bpl_scaf_24370-5.8 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_24370-6.16 | CYTOCHROME P450 FAMILY 3 |
| Bpl_scaf_24370-7.12 | CYTOCHROME P450 FAMILY 3 |
| Bpl_scaf_24370-7.13 | CYTOCHROME P450 FAMILY 3 |
| Bpl_scaf_24370-7.14 | CYTOCHROME P450 FAMILY 3 |
| Bpl_scaf_24370-7.8 | CYTOCHROME P450 FAMILY 3 |
| Bpl_scaf_24370-8.23 | CYTOCHROME P450 FAMILY 3 |
| Bpl_scaf_24370-8.24 | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT |
| Bpl_scaf_24427-0.7 | FG-GAP REPEAT-CONTAINING PROTEIN |
| Bpl_scaf_24427-0.8 | NEGATIVE ELONGATION FACTOR D |
| Bpl_scaf_24428-0.4 | SOLUTE CARRIER FAMILY 39 |
| Bpl_scaf_24428-1.13 | SIMILAR TO HYPOTHETICAL PROTEIN |
| Bpl_scaf_24428-1.18 | |
| Bpl_scaf_24428-1.19 | LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 |
| Bpl_scaf_24428-2.10 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| Bpl_scaf_24428-2.3 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
| Bpl_scaf_24428-2.9 | PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA COACTIVATOR 1 PGC-1 -RELATED |
| Bpl_scaf_24429-0.0 | CRUMBS FAMILY MEMBER |
| Bpl_scaf_24438-1.19 | NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B |
| Bpl_scaf_24438-1.22 | NUCLEAR HORMONE RECEPTOR |
| Bpl_scaf_24438-1.8 | |
| Bpl_scaf_24438-2.0 | |
| Bpl_scaf_24443-0.0 | |
| Bpl_scaf_24444-0.0 | |
| Bpl_scaf_24444-0.1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_24446-0.5 | |
| Bpl_scaf_24449-0.3 | N-ALPHA-ACETYLTRANSFERASE |
| Bpl_scaf_24449-0.4 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_24452-0.0 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Bpl_scaf_24455-0.2 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Bpl_scaf_24457-0.4 | ENGULFMENT AND CELL MOTILITY |
| Bpl_scaf_24458-0.4 |
