Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_24349-0.0 | |
| Bpl_scaf_24350-0.3 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 |
| Bpl_scaf_24350-1.20 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| Bpl_scaf_24350-1.21 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| Bpl_scaf_24350-1.22 | UNCHARACTERIZED |
| Bpl_scaf_24350-1.5 | |
| Bpl_scaf_24350-1.6 | JUN TRANSCRIPTION FACTOR-RELATED |
| Bpl_scaf_24350-2.3 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_24350-2.6 | ARMADILLO-LIKE HELICAL DOMAIN CONTAINING PROTEIN 1 |
| Bpl_scaf_24353-0.0 | |
| Bpl_scaf_24360-0.4 | |
| Bpl_scaf_24360-1.10 | COILED-COIL ALPHA-HELICAL ROD PROTEIN 1 |
| Bpl_scaf_24360-1.15 | ARRESTIN DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_24360-1.8 | COILED-COIL ALPHA-HELICAL ROD PROTEIN 1 |
| Bpl_scaf_24364-0.4 | UNCHARACTERIZED |
| Bpl_scaf_24368-0.2 | TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE |
| Bpl_scaf_24369-1.11 | UNCHARACTERIZED |
| Bpl_scaf_24369-1.12 | UNCHARACTERIZED |
| Bpl_scaf_24369-1.16 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_24369-2.13 | |
| Bpl_scaf_24369-2.18 | |
| Bpl_scaf_24369-2.5 | |
| Bpl_scaf_24369-2.7 | |
| Bpl_scaf_2437-0.5 | TPR REPEAT CONTAINING PROTEIN |
| Bpl_scaf_2437-1.3 | TPR REPEAT CONTAINING PROTEIN |
| Bpl_scaf_2437-2.1 | |
| Bpl_scaf_2437-2.11 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_2437-2.12 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
| Bpl_scaf_2437-2.3 | |
| Bpl_scaf_24370-0.5 | GLOBIN-LIKE PROTEIN |
| Bpl_scaf_24370-1.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L41 |
| Bpl_scaf_24370-1.15 | UNCHARACTERIZED |
| Bpl_scaf_24370-1.7 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
| Bpl_scaf_24370-1.8 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_24370-10.10 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
| Bpl_scaf_24370-10.12 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
| Bpl_scaf_24370-11.7 | N6-ADENOSINE-METHYLTRANSFERASE |
| Bpl_scaf_24370-11.9 | PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT |
| Bpl_scaf_24370-12.10 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 |
| Bpl_scaf_24370-12.14 | BETA-HEXOSAMINIDASE |
| Bpl_scaf_24370-13.11 | SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC |
| Bpl_scaf_24370-13.5 | PHOSPHATE-BINDING PROTEIN PSTS |
| Bpl_scaf_24370-13.6 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| Bpl_scaf_24370-13.8 | BOLA-LIKE PROTEIN 3 |
| Bpl_scaf_24370-14.3 | |
| Bpl_scaf_24370-14.4 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
| Bpl_scaf_24370-15.1 | CARBOHYDRATE SULFOTRANSFERASE 15 |
| Bpl_scaf_24370-15.4 | SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL |
| Bpl_scaf_24370-16.25 | SERINE/THREONINE-PROTEIN KINASE |
| Bpl_scaf_24370-16.3 |
