Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_24889-0.3 | SCAVENGER RECEPTOR CLASS F |
| Bpl_scaf_24922-0.3 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Bpl_scaf_24922-0.4 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Bpl_scaf_24922-1.15 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Bpl_scaf_24922-1.16 | ZINC FINGER B-BOX DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_24922-1.21 | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED |
| Bpl_scaf_24940-0.10 | PROTEIN FAM221A-RELATED |
| Bpl_scaf_24940-0.3 | |
| Bpl_scaf_24940-0.4 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J |
| Bpl_scaf_24940-1.13 | UNCHARACTERIZED |
| Bpl_scaf_24940-1.2 | |
| Bpl_scaf_24940-1.23 | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3 |
| Bpl_scaf_24940-1.24 | |
| Bpl_scaf_24940-1.25 | SH3 DOMAIN-CONTAINING |
| Bpl_scaf_24941-0.10 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_24941-0.6 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_24941-1.17 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_24941-1.62 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_24941-1.63 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_24951-0.16 | |
| Bpl_scaf_24951-0.18 | |
| Bpl_scaf_24951-0.19 | |
| Bpl_scaf_24951-1.1 | |
| Bpl_scaf_24951-1.14 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_24951-1.16 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Bpl_scaf_24951-1.23 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_24951-1.3 | |
| Bpl_scaf_24952-0.0 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_24953-0.0 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Bpl_scaf_24956-0.0 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
| Bpl_scaf_24965-0.5 | |
| Bpl_scaf_24965-0.7 | BRYOPORIN |
| Bpl_scaf_24965-1.18 | BRYOPORIN |
| Bpl_scaf_24965-1.19 | BRYOPORIN |
| Bpl_scaf_24965-1.20 | BRYOPORIN |
| Bpl_scaf_24965-1.21 | BRYOPORIN |
| Bpl_scaf_24965-1.22 | BRYOPORIN |
| Bpl_scaf_24966-0.11 | OS-9-RELATED |
| Bpl_scaf_24966-0.12 | |
| Bpl_scaf_24966-0.13 | PROSTAGLANDIN REDUCTASE |
| Bpl_scaf_24966-1.7 | GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2 |
| Bpl_scaf_24966-2.1 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
| Bpl_scaf_24966-3.0 | |
| Bpl_scaf_24966-5.5 | PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 |
| Bpl_scaf_24966-6.18 | BARDET-BIEDL SYNDROME 1 PROTEIN |
| Bpl_scaf_24966-6.19 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_24966-6.21 | ANKYRIN REPEAT CONTAINING |
| Bpl_scaf_24966-6.9 | CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 |
| Bpl_scaf_24966-7.5 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| Bpl_scaf_24966-7.8 | SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES |
