Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_2517-0.6 | |
| Bpl_scaf_2517-0.7 | THIOPURINE S-METHYLTRANSFERASE |
| Bpl_scaf_2517-0.8 | THIOPURINE S-METHYLTRANSFERASE |
| Bpl_scaf_25170-0.0 | |
| Bpl_scaf_25172-0.3 | SEMAPHORIN |
| Bpl_scaf_25173-0.14 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_25178-0.5 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_25178-0.7 | |
| Bpl_scaf_2518-0.1 | |
| Bpl_scaf_2518-0.6 | |
| Bpl_scaf_2518-0.7 | ZGC:195170 |
| Bpl_scaf_2518-0.9 | |
| Bpl_scaf_25180-0.2 | |
| Bpl_scaf_25181-0.0 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_25182-0.0 | |
| Bpl_scaf_25183-0.0 | ANKYRIN REPEAT-CONTAINING |
| Bpl_scaf_25186-0.0 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_25189-0.4 | OS10G0105400 PROTEIN |
| Bpl_scaf_2519-0.11 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Bpl_scaf_2519-0.12 | |
| Bpl_scaf_2519-0.7 | XK-RELATED PROTEIN |
| Bpl_scaf_2519-1.1 | HEPARAN SULFATE SULFOTRANSFERASE |
| Bpl_scaf_2519-1.14 | 40S RIBOSOMAL PROTEIN S12 |
| Bpl_scaf_2519-2.10 | SOLUTE CARRIER FAMILY 35 |
| Bpl_scaf_2519-2.26 | HEPARAN SULFATE SULFOTRANSFERASE |
| Bpl_scaf_2519-2.27 | URIDINE KINASE |
| Bpl_scaf_2519-2.28 | |
| Bpl_scaf_2519-3.5 | ZINC FINGER PROTEIN |
| Bpl_scaf_2519-3.7 | DNA PRIMASE LARGE SUBUNIT |
| Bpl_scaf_2519-3.8 | IFT140/172-RELATED |
| Bpl_scaf_2519-4.7 | NEPHRIN |
| Bpl_scaf_2519-4.9 | LYSOSOMAL COBALAMIN TRANSPORTER-RELATED |
| Bpl_scaf_2519-5.11 | UNCHARACTERIZED |
| Bpl_scaf_2519-5.12 | ALL-TRANS RETINOIC ACID-INDUCED DIFFERENTIATION FACTOR |
| Bpl_scaf_2519-5.13 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| Bpl_scaf_2519-5.14 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT |
| Bpl_scaf_2519-6.5 | CYTOSOLIC CARBOXYPEPTIDASE |
| Bpl_scaf_2519-7.11 | LYSOPHOSPHOLIPASE-RELATED |
| Bpl_scaf_2519-7.14 | RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 |
| Bpl_scaf_2519-7.9 | UNCHARACTERIZED |
| Bpl_scaf_25191-0.15 | |
| Bpl_scaf_25191-0.4 | |
| Bpl_scaf_25191-0.6 | |
| Bpl_scaf_25191-0.8 | |
| Bpl_scaf_25191-1.0 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_25191-1.14 | |
| Bpl_scaf_25191-1.7 | |
| Bpl_scaf_25191-2.10 | |
| Bpl_scaf_25191-2.13 | PUTATIVE-RELATED |
| Bpl_scaf_25191-2.15 |
