About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00269REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00270SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides00271-
Paelopatides00272-
Paelopatides00273-
Paelopatides00274LITHOSTATHINE
Paelopatides00275NECTIN-RELATED
Paelopatides00276FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides00277REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00278BUCENTAUR RELATED
Paelopatides00279TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides00280E3 UBIQUITIN-PROTEIN LIGASE RAD18
Paelopatides00281ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
Paelopatides00282-
Paelopatides00283PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides00284CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED
Paelopatides00285-
Paelopatides00286-
Paelopatides00287POL PROTEIN
Paelopatides00288ENZYMATIC POLYPROTEIN-RELATED
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