About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00228BUCENTAUR RELATED
Paelopatides00229SCAVENGER RECEPTOR DOMAIN-CONTAINING
Paelopatides00230-
Paelopatides00231-
Paelopatides00232COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides00234-
Paelopatides00235UNCHARACTERIZED
Paelopatides00236TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides00237-
Paelopatides00238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00239-
Paelopatides00240-
Paelopatides00241ACIDIC FIBROBLAST GROWTH FACTOR INTRACELLULAR BINDING PROTEIN
Paelopatides00242ACIDIC FIBROBLAST GROWTH FACTOR INTRACELLULAR BINDING PROTEIN
Paelopatides00243UBX DOMAIN-CONTAINING PROTEIN 1
Paelopatides00244-
Paelopatides00245-
Paelopatides00246-
Paelopatides00247ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides00248-
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