About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_006911-T1
LLU|FUN_006912-T1
LLU|FUN_006913-T1
LLU|FUN_006914-T1
LLU|FUN_006915-T1SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
LLU|FUN_006916-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_006917-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_006918-T1
LLU|FUN_006919-T1
LLU|FUN_006920-T1
LLU|FUN_006921-T1
LLU|FUN_006922-T1TELOMERASE REVERSE TRANSCRIPTASE
LLU|FUN_006923-T1LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN
LLU|FUN_006924-T1DIHYDROFOLATE REDUCTASE
LLU|FUN_006925-T1ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
LLU|FUN_006926-T1
LLU|FUN_006927-T1
LLU|FUN_006928-T1-
LLU|FUN_006929-T1
LLU|FUN_006930-T1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
LLU|FUN_006931-T1C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180
LLU|FUN_006932-T1
LLU|FUN_006933-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
LLU|FUN_006934-T1
LLU|FUN_006935-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
LLU|FUN_006936-T1
LLU|FUN_006937-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
LLU|FUN_006938-T1ZINC FINGER AND BTB DOMAIN-CONTAINING
LLU|FUN_006939-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10
LLU|FUN_006940-T1
LLU|FUN_006941-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
LLU|FUN_006942-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
LLU|FUN_006943-T1
LLU|FUN_006944-T1CHITINASE
LLU|FUN_006945-T1CHITINASE
LLU|FUN_006946-T1CHITIN BINDING PERITROPHIN-A
LLU|FUN_006947-T1
LLU|FUN_006948-T1MITOGEN-ACTIVATED PROTEIN KINASE
LLU|FUN_006949-T1AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
LLU|FUN_006950-T1
LLU|FUN_006951-T1
LLU|FUN_006952-T1
LLU|FUN_006953-T1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
LLU|FUN_006954-T1
LLU|FUN_006955-T1
LLU|FUN_006956-T1
LLU|FUN_006957-T1XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
LLU|FUN_006958-T1MATERNAL EFFECT PROTEIN STAUFEN
LLU|FUN_006959-T1EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE
LLU|FUN_006960-T1
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