Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_006911-T1 | |
LLU|FUN_006912-T1 | |
LLU|FUN_006913-T1 | |
LLU|FUN_006914-T1 | |
LLU|FUN_006915-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_006916-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_006917-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_006918-T1 | |
LLU|FUN_006919-T1 | |
LLU|FUN_006920-T1 | |
LLU|FUN_006921-T1 | |
LLU|FUN_006922-T1 | TELOMERASE REVERSE TRANSCRIPTASE |
LLU|FUN_006923-T1 | LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN |
LLU|FUN_006924-T1 | DIHYDROFOLATE REDUCTASE |
LLU|FUN_006925-T1 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_006926-T1 | |
LLU|FUN_006927-T1 | |
LLU|FUN_006928-T1 | - |
LLU|FUN_006929-T1 | |
LLU|FUN_006930-T1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
LLU|FUN_006931-T1 | C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 |
LLU|FUN_006932-T1 | |
LLU|FUN_006933-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_006934-T1 | |
LLU|FUN_006935-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_006936-T1 | |
LLU|FUN_006937-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_006938-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
LLU|FUN_006939-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 |
LLU|FUN_006940-T1 | |
LLU|FUN_006941-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_006942-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_006943-T1 | |
LLU|FUN_006944-T1 | CHITINASE |
LLU|FUN_006945-T1 | CHITINASE |
LLU|FUN_006946-T1 | CHITIN BINDING PERITROPHIN-A |
LLU|FUN_006947-T1 | |
LLU|FUN_006948-T1 | MITOGEN-ACTIVATED PROTEIN KINASE |
LLU|FUN_006949-T1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
LLU|FUN_006950-T1 | |
LLU|FUN_006951-T1 | |
LLU|FUN_006952-T1 | |
LLU|FUN_006953-T1 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
LLU|FUN_006954-T1 | |
LLU|FUN_006955-T1 | |
LLU|FUN_006956-T1 | |
LLU|FUN_006957-T1 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
LLU|FUN_006958-T1 | MATERNAL EFFECT PROTEIN STAUFEN |
LLU|FUN_006959-T1 | EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE |
LLU|FUN_006960-T1 |