Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_007011-T1 | THYROTROPH EMBRYONIC FACTOR RELATED |
LLU|FUN_007012-T1 | |
LLU|FUN_007013-T1 | |
LLU|FUN_007014-T1 | RHO FAMILY GTPASE |
LLU|FUN_007015-T1 | NECTIN-RELATED |
LLU|FUN_007016-T1 | |
LLU|FUN_007017-T1 | MITOCHONDRIAL INNER MEMBRANE PROTEASE |
LLU|FUN_007018-T1 | NITROGEN PERMEASE REGULATOR 2/TUMOR SUPPRESSOR CANDIDATE 4 |
LLU|FUN_007019-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
LLU|FUN_007020-T1 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
LLU|FUN_007021-T1 | |
LLU|FUN_007022-T1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
LLU|FUN_007023-T1 | |
LLU|FUN_007024-T1 | |
LLU|FUN_007025-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_007026-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_007027-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_007028-T1 | |
LLU|FUN_007029-T1 | |
LLU|FUN_007030-T1 | |
LLU|FUN_007031-T1 | |
LLU|FUN_007032-T1 | |
LLU|FUN_007033-T1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT |
LLU|FUN_007034-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 150 |
LLU|FUN_007035-T1 | MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT |
LLU|FUN_007040-T1 | |
LLU|FUN_007041-T1 | DIMETHYLANILINE MONOOXYGENASE |
LLU|FUN_007042-T1 | DIMETHYLANILINE MONOOXYGENASE |
LLU|FUN_007043-T1 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
LLU|FUN_007044-T1 | ZINC FINGER PROTEIN |
LLU|FUN_007045-T1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
LLU|FUN_007046-T1 | DEOXYRIBONUCLEASE II |
LLU|FUN_007047-T1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
LLU|FUN_007048-T1 | DEOXYRIBONUCLEASE II |
LLU|FUN_007049-T1 | ARYLACETAMIDE DEACETYLASE |
LLU|FUN_007051-T1 | |
LLU|FUN_007052-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_007053-T1 | COLLAGEN ALPHA |
LLU|FUN_007054-T1 | |
LLU|FUN_007055-T1 | |
LLU|FUN_007056-T1 | |
LLU|FUN_007057-T1 | |
LLU|FUN_007058-T1 | |
LLU|FUN_007059-T1 | |
LLU|FUN_007060-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
LLU|FUN_007061-T1 | |
LLU|FUN_007062-T1 | |
LLU|FUN_007063-T1 | |
LLU|FUN_007064-T1 | |
LLU|FUN_007065-T1 |