About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_007066-T1
LLU|FUN_007067-T1SIMILAR TO CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 (CHD-1)
LLU|FUN_007068-T1
LLU|FUN_007069-T1
LLU|FUN_007070-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
LLU|FUN_007071-T1
LLU|FUN_007072-T1
LLU|FUN_007073-T1SOLUTE CARRIER FAMILY 22 MEMBER
LLU|FUN_007074-T1SOLUTE CARRIER FAMILY 22 MEMBER
LLU|FUN_007075-T1YNEIN REGULATORY COMPLEX SUBUNIT 5
LLU|FUN_007076-T1
LLU|FUN_007077-T1
LLU|FUN_007078-T1
LLU|FUN_007079-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
LLU|FUN_007080-T1ATP-BINDING TRANSPORT PROTEIN-RELATED
LLU|FUN_007081-T1
LLU|FUN_007082-T1
LLU|FUN_007083-T1
LLU|FUN_007084-T1
LLU|FUN_007085-T1HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
LLU|FUN_007086-T1
LLU|FUN_007087-T1
LLU|FUN_007088-T1
LLU|FUN_007089-T1
LLU|FUN_007090-T1
LLU|FUN_007091-T1
LLU|FUN_007092-T1
LLU|FUN_007093-T1
LLU|FUN_007094-T1
LLU|FUN_007095-T1ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE
LLU|FUN_007096-T1CYTOCHROME C
LLU|FUN_007097-T1CYTOCHROME C
LLU|FUN_007098-T1CYTOCHROME C
LLU|FUN_007099-T1CYTOCHROME C
LLU|FUN_007100-T1COLLAGEN ALPHA
LLU|FUN_007101-T1
LLU|FUN_007102-T1EPHRIN TYPE-B RECEPTOR
LLU|FUN_007103-T1
LLU|FUN_007104-T1HISTONE H1
LLU|FUN_007105-T1
LLU|FUN_007106-T1TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
LLU|FUN_007107-T1TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
LLU|FUN_007108-T1CD59 GLYCOPROTEIN
LLU|FUN_007109-T1
LLU|FUN_007110-T1CD59 GLYCOPROTEIN
LLU|FUN_007111-T1ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_007112-T1FORKHEAD BOX PROTEIN N1
LLU|FUN_007113-T1STAC
LLU|FUN_007114-T1
LLU|FUN_007115-T1
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