Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_006861-T1 | RAB GDP/GTP EXCHANGE FACTOR |
LLU|FUN_006862-T1 | KINESIN-LIKE PROTEIN KIN-12D |
LLU|FUN_006863-T1 | |
LLU|FUN_006864-T1 | |
LLU|FUN_006865-T1 | |
LLU|FUN_006866-T1 | ACYL CARRIER PROTEIN |
LLU|FUN_006867-T1 | VACUOLAR IMPORT AND DEGRADATION PROTEIN 24 |
LLU|FUN_006868-T1 | ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR |
LLU|FUN_006869-T1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
LLU|FUN_006870-T1 | VHS DOMAIN CONTAINING PROTEIN FAMILY |
LLU|FUN_006871-T1 | SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN |
LLU|FUN_006872-T1 | E3 UBIQUITIN-PROTEIN LIGASE CHIP |
LLU|FUN_006873-T1 | DNA-DIRECTED RNA POLYMERASE II, III |
LLU|FUN_006874-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
LLU|FUN_006875-T1 | |
LLU|FUN_006876-T1 | |
LLU|FUN_006877-T1 | |
LLU|FUN_006878-T1 | |
LLU|FUN_006879-T1 | GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-LIKE |
LLU|FUN_006880-T1 | |
LLU|FUN_006881-T1 | |
LLU|FUN_006882-T1 | |
LLU|FUN_006883-T1 | |
LLU|FUN_006884-T1 | |
LLU|FUN_006885-T1 | THIOREDOXIN, MITOCHONDRIAL |
LLU|FUN_006886-T1 | UNCHARACTERIZED |
LLU|FUN_006887-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
LLU|FUN_006888-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
LLU|FUN_006889-T1 | |
LLU|FUN_006890-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
LLU|FUN_006891-T1 | |
LLU|FUN_006892-T1 | |
LLU|FUN_006893-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_006894-T1 | |
LLU|FUN_006895-T1 | |
LLU|FUN_006896-T1 | |
LLU|FUN_006897-T1 | |
LLU|FUN_006898-T1 | |
LLU|FUN_006899-T1 | |
LLU|FUN_006900-T1 | |
LLU|FUN_006901-T1 | ACTIN |
LLU|FUN_006902-T1 | PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE |
LLU|FUN_006903-T1 | |
LLU|FUN_006904-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_006905-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_006906-T1 | |
LLU|FUN_006907-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_006908-T1 | MAESTRO-RELATED HEAT DOMAIN-CONTAINING |
LLU|FUN_006909-T1 | MAESTRO-RELATED HEAT DOMAIN-CONTAINING |
LLU|FUN_006910-T1 | MUCIN-22 |