About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_006711-T1
LLU|FUN_006712-T1
LLU|FUN_006713-T1OTU DOMAIN CONTAINING PROTEIN
LLU|FUN_006714-T1TRANSCRIPTION FACTOR SPT20 HOMOLOG
LLU|FUN_006715-T1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON
LLU|FUN_006716-T1UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE
LLU|FUN_006717-T1PRE-MRNA CLEAVAGE COMPLEX II
LLU|FUN_006718-T1RAS-RELATED PROTEIN RAB
LLU|FUN_006719-T1-
LLU|FUN_006720-T1
LLU|FUN_006721-T1-
LLU|FUN_006722-T1N-TERMINAL ACETYLTRANSFERASE-RELATED
LLU|FUN_006723-T1MALATE SYNTHASE
LLU|FUN_006724-T1
LLU|FUN_006725-T1LIN-24 (TWENTY-FOUR) LIKE
LLU|FUN_006726-T1TOLL-LIKE RECEPTOR
LLU|FUN_006727-T1TOLL-LIKE RECEPTOR
LLU|FUN_006728-T1
LLU|FUN_006729-T1QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE
LLU|FUN_006730-T1THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED
LLU|FUN_006731-T1
LLU|FUN_006732-T1
LLU|FUN_006733-T1VASCULAR ENDOTHELIAL GROWTH FACTOR
LLU|FUN_006734-T1
LLU|FUN_006735-T1
LLU|FUN_006736-T1
LLU|FUN_006737-T1
LLU|FUN_006738-T1
LLU|FUN_006739-T1
LLU|FUN_006740-T1ARYLSULFATASE FAMILY MEMBER
LLU|FUN_006741-T1ARYLSULFATASE FAMILY MEMBER
LLU|FUN_006742-T1UNCHARACTERIZED
LLU|FUN_006743-T1NUCLEAR HORMONE RECEPTOR
LLU|FUN_006744-T1
LLU|FUN_006745-T1
LLU|FUN_006746-T1
LLU|FUN_006747-T1UNCHARACTERIZED
LLU|FUN_006748-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
LLU|FUN_006749-T1TRANSMEMBRANE PROTEIN 42
LLU|FUN_006750-T1
LLU|FUN_006751-T1ER MEMBRANE PROTEIN COMPLEX
LLU|FUN_006752-T1KINESIN-LIKE PROTEIN KIN-12D
LLU|FUN_006753-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
LLU|FUN_006754-T1HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER
LLU|FUN_006755-T1MUCIN-22
LLU|FUN_006756-T1CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
LLU|FUN_006757-T1
LLU|FUN_006758-T1BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN
LLU|FUN_006759-T1
LLU|FUN_006760-T1
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