Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_006711-T1 | |
LLU|FUN_006712-T1 | |
LLU|FUN_006713-T1 | OTU DOMAIN CONTAINING PROTEIN |
LLU|FUN_006714-T1 | TRANSCRIPTION FACTOR SPT20 HOMOLOG |
LLU|FUN_006715-T1 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON |
LLU|FUN_006716-T1 | UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE |
LLU|FUN_006717-T1 | PRE-MRNA CLEAVAGE COMPLEX II |
LLU|FUN_006718-T1 | RAS-RELATED PROTEIN RAB |
LLU|FUN_006719-T1 | - |
LLU|FUN_006720-T1 | |
LLU|FUN_006721-T1 | - |
LLU|FUN_006722-T1 | N-TERMINAL ACETYLTRANSFERASE-RELATED |
LLU|FUN_006723-T1 | MALATE SYNTHASE |
LLU|FUN_006724-T1 | |
LLU|FUN_006725-T1 | LIN-24 (TWENTY-FOUR) LIKE |
LLU|FUN_006726-T1 | TOLL-LIKE RECEPTOR |
LLU|FUN_006727-T1 | TOLL-LIKE RECEPTOR |
LLU|FUN_006728-T1 | |
LLU|FUN_006729-T1 | QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE |
LLU|FUN_006730-T1 | THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED |
LLU|FUN_006731-T1 | |
LLU|FUN_006732-T1 | |
LLU|FUN_006733-T1 | VASCULAR ENDOTHELIAL GROWTH FACTOR |
LLU|FUN_006734-T1 | |
LLU|FUN_006735-T1 | |
LLU|FUN_006736-T1 | |
LLU|FUN_006737-T1 | |
LLU|FUN_006738-T1 | |
LLU|FUN_006739-T1 | |
LLU|FUN_006740-T1 | ARYLSULFATASE FAMILY MEMBER |
LLU|FUN_006741-T1 | ARYLSULFATASE FAMILY MEMBER |
LLU|FUN_006742-T1 | UNCHARACTERIZED |
LLU|FUN_006743-T1 | NUCLEAR HORMONE RECEPTOR |
LLU|FUN_006744-T1 | |
LLU|FUN_006745-T1 | |
LLU|FUN_006746-T1 | |
LLU|FUN_006747-T1 | UNCHARACTERIZED |
LLU|FUN_006748-T1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
LLU|FUN_006749-T1 | TRANSMEMBRANE PROTEIN 42 |
LLU|FUN_006750-T1 | |
LLU|FUN_006751-T1 | ER MEMBRANE PROTEIN COMPLEX |
LLU|FUN_006752-T1 | KINESIN-LIKE PROTEIN KIN-12D |
LLU|FUN_006753-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
LLU|FUN_006754-T1 | HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER |
LLU|FUN_006755-T1 | MUCIN-22 |
LLU|FUN_006756-T1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
LLU|FUN_006757-T1 | |
LLU|FUN_006758-T1 | BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN |
LLU|FUN_006759-T1 | |
LLU|FUN_006760-T1 |