Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_006459-T1 | |
LLU|FUN_006460-T1 | |
LLU|FUN_006461-T1 | |
LLU|FUN_006462-T1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_006463-T1 | |
LLU|FUN_006464-T1 | SPERIOLIN-BINDING FACTOR |
LLU|FUN_006465-T1 | SPERIOLIN-BINDING FACTOR |
LLU|FUN_006466-T1 | DYNEIN HEAVY CHAIN |
LLU|FUN_006467-T1 | CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE |
LLU|FUN_006468-T1 | TETRASPANIN |
LLU|FUN_006469-T1 | |
LLU|FUN_006470-T1 | |
LLU|FUN_006471-T1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
LLU|FUN_006472-T1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
LLU|FUN_006473-T1 | CENTROSOMAL PROTEIN OF 290 KDA |
LLU|FUN_006474-T1 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 |
LLU|FUN_006475-T1 | SELENOPROTEIN F |
LLU|FUN_006476-T1 | |
LLU|FUN_006477-T1 | |
LLU|FUN_006478-T1 | 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_006479-T1 | DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN |
LLU|FUN_006480-T1 | KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG |
LLU|FUN_006481-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
LLU|FUN_006482-T1 | |
LLU|FUN_006483-T1 | |
LLU|FUN_006484-T1 | |
LLU|FUN_006485-T1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
LLU|FUN_006486-T1 | |
LLU|FUN_006487-T1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
LLU|FUN_006488-T1 | SOLUTE CARRIER FAMILY 39 |
LLU|FUN_006489-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
LLU|FUN_006490-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
LLU|FUN_006491-T1 | |
LLU|FUN_006492-T1 | |
LLU|FUN_006493-T1 | |
LLU|FUN_006494-T1 | |
LLU|FUN_006495-T1 | |
LLU|FUN_006496-T1 | |
LLU|FUN_006497-T1 | CS DOMAIN-CONTAINING PROTEIN |
LLU|FUN_006498-T1 | |
LLU|FUN_006499-T1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
LLU|FUN_006500-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 221 |
LLU|FUN_006501-T1 | ADP RIBOSYLATION FACTOR-RELATED |
LLU|FUN_006502-T1 | DEPHOSPHO-COA KINASE-RELATED |
LLU|FUN_006503-T1 | DELTEX-RELATED |
LLU|FUN_006504-T1 | DELTEX-RELATED |
LLU|FUN_006505-T1 | COILED-COIL DOMAIN-CONTAINING 74A |
LLU|FUN_006506-T1 | SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG |
LLU|FUN_006507-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5 |
LLU|FUN_006508-T1 | 28S RIBOSOMAL PROTEIN S36, MITOCHONDRIAL |