Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_006761-T1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
LLU|FUN_006762-T1 | |
LLU|FUN_006763-T1 | ACROSIN-RELATED |
LLU|FUN_006764-T1 | AMPLIFIED IN BREAST CANCER 2-RELATED |
LLU|FUN_006765-T1 | |
LLU|FUN_006766-T1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN |
LLU|FUN_006767-T1 | DNA REPAIR PROTEIN REV1 |
LLU|FUN_006768-T1 | UNCHARACTERIZED |
LLU|FUN_006769-T1 | DYNAMIN |
LLU|FUN_006770-T1 | PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 |
LLU|FUN_006771-T1 | RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT |
LLU|FUN_006772-T1 | RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED |
LLU|FUN_006773-T1 | PROHIBITIN |
LLU|FUN_006774-T1 | |
LLU|FUN_006775-T1 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
LLU|FUN_006776-T1 | |
LLU|FUN_006777-T1 | INNEXIN |
LLU|FUN_006778-T1 | INNEXIN |
LLU|FUN_006779-T1 | INNEXIN |
LLU|FUN_006780-T1 | INNEXIN |
LLU|FUN_006781-T1 | |
LLU|FUN_006782-T1 | INNEXIN |
LLU|FUN_006783-T1 | TROPONIN C-AKIN-1 PROTEIN |
LLU|FUN_006784-T1 | |
LLU|FUN_006785-T1 | |
LLU|FUN_006786-T1 | |
LLU|FUN_006787-T1 | |
LLU|FUN_006788-T1 | |
LLU|FUN_006789-T1 | ATP-DEPENDENT RNA HELICASE DBP3 |
LLU|FUN_006790-T1 | |
LLU|FUN_006791-T1 | |
LLU|FUN_006792-T1 | |
LLU|FUN_006793-T1 | |
LLU|FUN_006794-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_006795-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
LLU|FUN_006796-T1 | REPETIN |
LLU|FUN_006797-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
LLU|FUN_006798-T1 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
LLU|FUN_006799-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_006800-T1 | |
LLU|FUN_006801-T1 | PROTEIN EVA-1 |
LLU|FUN_006802-T1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
LLU|FUN_006803-T1 | |
LLU|FUN_006804-T1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
LLU|FUN_006805-T1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
LLU|FUN_006806-T1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
LLU|FUN_006807-T1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
LLU|FUN_006808-T1 | |
LLU|FUN_006809-T1 | DELTA-AMINOLEVULINIC ACID DEHYDRATASE |
LLU|FUN_006810-T1 | SNARE-ASSOCIATED PROTEIN SNAPIN |