The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides59504 | |
| Paelopatides59505 | |
| Paelopatides59506 | PUTATIVE-RELATED |
| Paelopatides59508 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides59509 | BEN DOMAIN-CONTAINING PROTEIN 5 |
| Paelopatides59510 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
| Paelopatides59513 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59514 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59515 | RETROTRANSPOSON |
| Paelopatides59516 | RETROTRANSPOSON |
| Paelopatides59517 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59518 | |
| Paelopatides59519 | EXPRESSED PROTEIN |
| Paelopatides59520 | TUBULIN |
| Paelopatides59521 | TUBULIN |
| Paelopatides59522 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER |
| Paelopatides59523 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 |
| Paelopatides59524 | REVERSE TRANSCRIPTASES |
| Paelopatides59525 | HEAVYWEIGHT, ISOFORM A |
| Paelopatides59526 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59527 | RETROTRANSPOSON |
| Paelopatides59528 | |
| Paelopatides59529 | ACYL-MALONYL CONDENSING ENZYME-RELATED |
| Paelopatides59530 | MULTI-COPPER OXIDASE |
| Paelopatides59531 | MULTI-COPPER OXIDASE |
| Paelopatides59532 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59533 | |
| Paelopatides59534 | |
| Paelopatides59535 | METABOTROPIC GLUTAMATE RECEPTOR |
| Paelopatides59536 | |
| Paelopatides59537 | SI:CH211-196P9.1-RELATED |
| Paelopatides59538 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Paelopatides59539 | |
| Paelopatides59540 | |
| Paelopatides59541 | |
| Paelopatides59542 | UNCHARACTERIZED |
| Paelopatides59543 | |
| Paelopatides59545 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Paelopatides59546 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59547 | TRANSMEMBRANE PROTEIN 42 |
| Paelopatides59548 | CCAAT/ENHANCER BINDING PROTEIN |
| Paelopatides59549 | |
| Paelopatides59550 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| Paelopatides59551 | EXPRESSED PROTEIN |
| Paelopatides59552 | UNCHARACTERIZED |
| Paelopatides59553 | UNCHARACTERIZED |
| Paelopatides59554 | GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE |
| Paelopatides59555 | ARMADILLO-LIKE HELICAL DOMAIN CONTAINING PROTEIN 1 |
| Paelopatides59556 | TAX1-BINDING PROTEIN 3-RELATED |
| Paelopatides59557 |
