The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides59346 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides59347 | PROTEIN CBG26694 |
| Paelopatides59348 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides59349 | PH DOMAIN-CONTAINING PROTEIN |
| Paelopatides59350 | PROTEIN CBG26694 |
| Paelopatides59351 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides59352 | O-ACYLTRANSFERASE |
| Paelopatides59353 | BUCENTAUR RELATED |
| Paelopatides59354 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59355 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Paelopatides59356 | UNCHARACTERIZED |
| Paelopatides59357 | |
| Paelopatides59358 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Paelopatides59359 | |
| Paelopatides59360 | |
| Paelopatides59361 | |
| Paelopatides59362 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 4 HOMOLOG |
| Paelopatides59363 | CTF8, CHROMOSOME TRANSMISSION FIDELITY FACTOR 8 HOMOLOG (S. CEREVISIAE) |
| Paelopatides59369 | ENDONUCLEASE-RELATED |
| Paelopatides59370 | ENDONUCLEASE-RELATED |
| Paelopatides59371 | CELL DIVISION CYCLE 16,23,27 |
| Paelopatides59372 | PROTEIN CBG26694 |
| Paelopatides59373 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59374 | ADHESION G PROTEIN-COUPLED RECEPTOR G7 |
| Paelopatides59375 | BUCENTAUR RELATED |
| Paelopatides59376 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59377 | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 |
| Paelopatides59378 | |
| Paelopatides59379 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| Paelopatides59380 | BIFUNCTIONAL TH2 PROTEIN |
| Paelopatides59381 | |
| Paelopatides59382 | DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 |
| Paelopatides59383 | BREAST CANCER METASTASIS-SUPPRESSOR 1 |
| Paelopatides59384 | FMS INTERACTING PROTEIN |
| Paelopatides59386 | RING FINGER PROTEIN-RELATED |
| Paelopatides59387 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Paelopatides59388 | MYOSIN |
| Paelopatides59389 | |
| Paelopatides59390 | |
| Paelopatides59391 | RIKEN CDNA D130052B06 GENE |
| Paelopatides59392 | A-KINASE-INTERACTING PROTEIN 1 |
| Paelopatides59393 | |
| Paelopatides59394 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59395 | |
| Paelopatides59396 | - |
| Paelopatides59397 | FRUCTOSE-2,6-BISPHOSPHATASE TIGAR |
| Paelopatides59398 | |
| Paelopatides59399 | RETROTRANSPOSON |
| Paelopatides59400 | NETRIN RECEPTOR UNC5 |
| Paelopatides59401 | INVERTED FORMIN-2 |
