The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides59454 | RHO FAMILY GTPASE |
| Paelopatides59455 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| Paelopatides59456 | PROTEIN CBG26694 |
| Paelopatides59457 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| Paelopatides59458 | |
| Paelopatides59459 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| Paelopatides59460 | SERINE/ARGININE REPETITIVE MATRIX PROTEIN 5-RELATED |
| Paelopatides59461 | |
| Paelopatides59462 | IP13529P |
| Paelopatides59463 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59464 | LIM DOMAIN KINASE 1 |
| Paelopatides59465 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| Paelopatides59466 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
| Paelopatides59467 | |
| Paelopatides59468 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59469 | EXPRESSED PROTEIN |
| Paelopatides59470 | |
| Paelopatides59471 | |
| Paelopatides59472 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59473 | RETROTRANSPOSON |
| Paelopatides59474 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
| Paelopatides59475 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| Paelopatides59476 | HEDGEHOG |
| Paelopatides59477 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Paelopatides59478 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| Paelopatides59479 | |
| Paelopatides59480 | |
| Paelopatides59481 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides59482 | PROTEIN CBG10425 |
| Paelopatides59483 | G DOMAIN-CONTAINING PROTEIN |
| Paelopatides59484 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59485 | VOLTAGE-GATED POTASSIUM CHANNEL |
| Paelopatides59486 | |
| Paelopatides59487 | REVERSE TRANSCRIPTASES |
| Paelopatides59488 | |
| Paelopatides59489 | PX DOMAIN-CONTAINING PROTEIN |
| Paelopatides59490 | |
| Paelopatides59491 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides59492 | |
| Paelopatides59493 | ATP-DEPENDENT DNA HELICASE |
| Paelopatides59494 | |
| Paelopatides59495 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED |
| Paelopatides59496 | UNCHARACTERIZED |
| Paelopatides59497 | |
| Paelopatides59498 | RING FINGER PROTEIN 17 |
| Paelopatides59499 | PROTEASE M50 MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE 2 PROTEASE |
| Paelopatides59500 | PROTEIN CBG26694 |
| Paelopatides59501 | NANCE-HORAN SYNDROME PROTEIN |
| Paelopatides59502 | |
| Paelopatides59503 | SPERM-SPECIFIC FAMILY, CLASS Q |
