The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides53237 | TRANSPOSASE, PUTATIVE-RELATED |
| Paelopatides53238 | |
| Paelopatides53239 | |
| Paelopatides53240 | |
| Paelopatides53241 | |
| Paelopatides53242 | PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR |
| Paelopatides53243 | |
| Paelopatides53244 | NADH DEHYDROGENASE (UBIQUINONE) 1 BETA SUBCOMPLEX, 4 |
| Paelopatides53245 | |
| Paelopatides53246 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides53247 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12 |
| Paelopatides53249 | 5-OXOPROLINASE RELATED |
| Paelopatides53250 | |
| Paelopatides53251 | DUF614 FAMILY PROTEIN-RELATED |
| Paelopatides53252 | |
| Paelopatides53253 | GLUCOSE-6-PHOSPHATE ISOMERASE |
| Paelopatides53254 | |
| Paelopatides53255 | RIKEN CDNA 4931406P16 GENE |
| Paelopatides53256 | |
| Paelopatides53257 | |
| Paelopatides53258 | TWISTED GASTRULATION PROTEIN HOMOLOG 1-A-RELATED |
| Paelopatides53259 | |
| Paelopatides53260 | CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN |
| Paelopatides53261 | |
| Paelopatides53262 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 |
| Paelopatides53263 | ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 |
| Paelopatides53264 | |
| Paelopatides53265 | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN |
| Paelopatides53266 | NEUROTRANSMITTER GATED ION CHANNEL |
| Paelopatides53267 | ENZYMATIC POLYPROTEIN-RELATED |
| Paelopatides53268 | UNCHARACTERIZED |
| Paelopatides53269 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| Paelopatides53270 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| Paelopatides53271 | ENDONUCLEASE-RELATED |
| Paelopatides53272 | ENZYMATIC POLYPROTEIN-RELATED |
| Paelopatides53273 | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER |
| Paelopatides53274 | RHO GTPASE-ACTIVATING PROTEIN 190 |
| Paelopatides53275 | EGL NINE HOMOLOG-RELATED |
| Paelopatides53276 | EGL NINE HOMOLOG-RELATED |
| Paelopatides53277 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides53278 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Paelopatides53279 | ENZYMATIC POLYPROTEIN-RELATED |
| Paelopatides53280 | |
| Paelopatides53281 | |
| Paelopatides53282 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides53283 | |
| Paelopatides53284 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Paelopatides53285 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
| Paelopatides53286 | ANKYRIN REPEAT DOMAIN 40 |
| Paelopatides53287 |
