The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Paelopatides sp. Yap | Echinodermata | Paelopatides sp. Yap | Deep sea | 6,633 | Yap Trench at 8°1′22"N; 137°50′41"E | - |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 3.7Gb | Contig | 2020 | - | Fujian Agriculture and Forestry University | PRJCA003789 | 89.40% | 57,522 |
| Title | Journal | Pubmed ID |
|---|---|---|
| The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environments | iScience | 36444293 |
| Gene ID | Description |
|---|---|
| Paelopatides53134 | CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING |
| Paelopatides53135 | MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE |
| Paelopatides53137 | 60S RIBOSOMAL PROTEIN L6 |
| Paelopatides53138 | UNCHARACTERIZED |
| Paelopatides53139 | |
| Paelopatides53140 | ZGC:101858 |
| Paelopatides53141 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN |
| Paelopatides53142 | |
| Paelopatides53143 | |
| Paelopatides53144 | ARYLSULFATASE |
| Paelopatides53145 | |
| Paelopatides53146 | TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides53147 | SLIT HOMOLOG |
| Paelopatides53148 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Paelopatides53149 | |
| Paelopatides53150 | |
| Paelopatides53151 | MONOCARBOXYLATE TRANSPORTER |
| Paelopatides53152 | MULTICOPPER OXIDASE-RELATED |
| Paelopatides53153 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides53154 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides53155 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides53156 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Paelopatides53157 | COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 2/NUR77 |
| Paelopatides53158 | KINETOCHORE-ASSOCIATED PROTEIN DSN1 HOMOLOG |
| Paelopatides53161 | |
| Paelopatides53162 | |
| Paelopatides53163 | |
| Paelopatides53164 | |
| Paelopatides53165 | |
| Paelopatides53166 | BETA-CAROTENE DIOXYGENASE |
| Paelopatides53167 | TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides53168 | TRANSPOSABLE ELEMENT-RELATED |
| Paelopatides53169 | SIT4 YEAST -ASSOCIATING PROTEIN-RELATED |
| Paelopatides53170 | UNCHARACTERIZED |
| Paelopatides53171 | CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A |
| Paelopatides53172 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
| Paelopatides53173 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Paelopatides53174 | HMG DOMAIN-CONTAINING PROTEIN 3 |
| Paelopatides53175 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
| Paelopatides53176 | |
| Paelopatides53177 | |
| Paelopatides53178 | TRANSPOSON TY3-I GAG-POL POLYPROTEIN |
| Paelopatides53179 | ENDONUCLEASE-RELATED |
| Paelopatides53180 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Paelopatides53181 | OVOCHYMASE-RELATED |
| Paelopatides53182 | NEPHRIN |
| Paelopatides53183 | |
| Paelopatides53184 | |
| Paelopatides53185 | AGAP008170-PA |
| Paelopatides53186 |
