Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047271.1 | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT |
| CAI8047272.1 | |
| CAI8047274.1 | PYRIDOXINE-5-PHOSPHATE OXIDASE |
| CAI8047273.1 | PYRIDOXINE-5-PHOSPHATE OXIDASE |
| CAI8047275.1 | TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKG-RELATED |
| CAI8047276.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8047277.1 | AMINOMETHYLTRANSFERASE |
| CAI8047278.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8047279.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8047280.1 | BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA |
| CAI8047281.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8047282.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8047283.1 | UNCHARACTERIZED |
| CAI8047284.1 | ACETYL-COENZYME A SYNTHETASE |
| CAI8047285.1 | |
| CAI8047286.1 | |
| CAI8047287.1 | SUGAR KINASE |
| CAI8047288.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8047289.1 | CYTOCHROME P450 20A1 |
| CAI8047290.1 | CYTOCHROME P450 20A1 |
| CAI8047291.1 | RING BOX |
| CAI8047295.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8047294.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8047293.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8047292.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8047296.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8047297.1 | |
| CAI8047298.1 | NADH DEHYDROGENASE |
| CAI8047301.1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| CAI8047300.1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| CAI8047299.1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| CAI8047302.1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| CAI8047303.1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| CAI8047304.1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| CAI8047305.1 | HYDROXYACYL-THIOESTER DEHYDRATASE TYPE 2, MITOCHONDRIAL-RELATED |
| CAI8047306.1 | TRANSAMIDASE |
| CAI8047307.1 | ACYL-COA SYNTHETASE |
| CAI8047308.1 | RIBONUCLEASE |
| CAI8047314.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8047313.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8047312.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8047311.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8047310.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8047309.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8047315.1 | ARSENATE REDUCTASE |
| CAI8047320.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8047318.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8047317.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8047319.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8047316.1 | HISTIDINOL DEHYDROGENASE HDH |
