Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047071.1 | |
| CAI8047073.1 | |
| CAI8047072.1 | |
| CAI8047074.1 | |
| CAI8047075.1 | |
| CAI8047076.1 | |
| CAI8047077.1 | |
| CAI8047078.1 | WD40 REPEAT PROTEIN |
| CAI8047080.1 | UV EXCISION REPAIR PROTEIN RAD23 |
| CAI8047079.1 | UV EXCISION REPAIR PROTEIN RAD23 |
| CAI8047081.1 | UV EXCISION REPAIR PROTEIN RAD23 |
| CAI8047082.1 | UNCHARACTERIZED |
| CAI8047083.1 | UNCHARACTERIZED |
| CAI8047084.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8047085.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8047086.1 | |
| CAI8047089.1 | CYSTEINE PROTEASE ATG4 |
| CAI8047088.1 | CYSTEINE PROTEASE ATG4 |
| CAI8047087.1 | PNAS-3 RELATED |
| CAI8047090.1 | |
| CAI8047091.1 | CYSTEINE PROTEASE ATG4 |
| CAI8047092.1 | |
| CAI8047093.1 | |
| CAI8047094.1 | |
| CAI8047097.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047095.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047096.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047098.1 | |
| CAI8047099.1 | |
| CAI8047100.1 | |
| CAI8047101.1 | |
| CAI8047102.1 | |
| CAI8047103.1 | EF HAND DOMAIN FAMILY A1,A2-RELATED |
| CAI8047104.1 | |
| CAI8047105.1 | BONUS, ISOFORM C-RELATED |
| CAI8047106.1 | BONUS, ISOFORM C-RELATED |
| CAI8047107.1 | |
| CAI8047108.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8047109.1 | SLL0198 PROTEIN-RELATED |
| CAI8047110.1 | ARSENITE METHYLTRANSFERASE |
| CAI8047111.1 | |
| CAI8047112.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8047113.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8047114.1 | |
| CAI8047115.1 | |
| CAI8047116.1 | |
| CAI8047120.1 | |
| CAI8047119.1 | |
| CAI8047122.1 | |
| CAI8047121.1 |
