Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046971.1 | SUGAR FERMENTATION STIMULATION PROTEIN A |
| CAI8046972.1 | A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III |
| CAI8046973.1 | |
| CAI8046974.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8046975.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI8046976.1 | THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTIC |
| CAI8046977.1 | UNCHARACTERIZED |
| CAI8046978.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8046979.1 | THIOL:DISULFIDE INTERCHANGE PROTEIN DSBE |
| CAI8046980.1 | |
| CAI8046981.1 | LONG-CHAIN-ALCOHOL OXIDASE |
| CAI8046982.1 | ACETYL-COA C-ACYLTRANSFERASE |
| CAI8046983.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8046984.1 | METHIONINE SYNTHASE |
| CAI8046985.1 | METHIONINE SYNTHASE |
| CAI8046986.1 | |
| CAI8046987.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8046988.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8046989.1 | TRANSAMIDASE |
| CAI8046990.1 | TRANSAMIDASE |
| CAI8046995.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8046994.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8046993.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8046992.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8046991.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8046996.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8046999.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8046998.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8046997.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8047000.1 | XANTHINE DEHYDROGENASE |
| CAI8047001.1 | LIPOPROTEIN-RELATED |
| CAI8047002.1 | ACID HYDRATASE |
| CAI8047004.1 | ACYL-COA SYNTHETASE |
| CAI8047003.1 | ACYL-COA SYNTHETASE |
| CAI8047005.1 | |
| CAI8047010.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8047009.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8047008.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8047007.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8047006.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8047011.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8047012.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8047013.1 | |
| CAI8047016.1 | MYOSIN |
| CAI8047015.1 | MYOSIN |
| CAI8047014.1 | MYOSIN |
| CAI8047017.1 | MYOSIN |
| CAI8047018.1 | TWO PORE CALCIUM CHANNEL PROTEIN 2 |
| CAI8047019.1 | |
| CAI8047021.1 |
