Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046672.1 | |
| CAI8046671.1 | |
| CAI8046673.1 | |
| CAI8046675.1 | PALMITOYLTRANSFERASE ZDHHC16 |
| CAI8046674.1 | PALMITOYLTRANSFERASE ZDHHC16 |
| CAI8046676.1 | PALMITOYLTRANSFERASE ZDHHC16 |
| CAI8046678.1 | TIGHT JUNCTION PROTEIN |
| CAI8046679.1 | |
| CAI8046677.1 | |
| CAI8046680.1 | TIGHT JUNCTION PROTEIN |
| CAI8046681.1 | |
| CAI8046682.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| CAI8046683.1 | SORTILIN RELATED |
| CAI8046684.1 | |
| CAI8046686.1 | SORTILIN RELATED |
| CAI8046685.1 | SORTILIN RELATED |
| CAI8046687.1 | SORTILIN RELATED |
| CAI8046688.1 | SORTILIN RELATED |
| CAI8046689.1 | SORTILIN RELATED |
| CAI8046690.1 | SORTILIN RELATED |
| CAI8046691.1 | |
| CAI8046692.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| CAI8046693.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8046694.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8046695.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8046696.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8046697.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8046698.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8046699.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8046700.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8046702.1 | OCTANOYLTRANSFERASE |
| CAI8046701.1 | OCTANOYLTRANSFERASE |
| CAI8046703.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8046704.1 | H REPEAT-ASSOCIATED PREDICTED TRANSPOSASE |
| CAI8046705.1 | H REPEAT-ASSOCIATED PREDICTED TRANSPOSASE |
| CAI8046706.1 | CATECHOL-2,3-DIOXYGENASE |
| CAI8046707.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8046708.1 | |
| CAI8046709.1 | |
| CAI8046710.1 | |
| CAI8046713.1 | |
| CAI8046711.1 | |
| CAI8046712.1 | |
| CAI8046718.1 | |
| CAI8046714.1 | |
| CAI8046717.1 | |
| CAI8046716.1 | |
| CAI8046715.1 | |
| CAI8046719.1 | |
| CAI8046720.1 |
