Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046421.1 | |
| CAI8046422.1 | |
| CAI8046423.1 | |
| CAI8046424.1 | |
| CAI8046425.1 | |
| CAI8046426.1 | UNCHARACTERIZED |
| CAI8046428.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8046427.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8046429.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI8046430.1 | |
| CAI8046433.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI8046432.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI8046431.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI8046434.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8046435.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8046436.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8046437.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8046438.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8046440.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8046439.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8046442.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8046441.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8046443.1 | BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA |
| CAI8046444.1 | RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE |
| CAI8046445.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8046446.1 | |
| CAI8046447.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8046448.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8046450.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8046449.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8046451.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8046452.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8046453.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8046454.1 | POTASSIUM CHANNEL PROTEIN 2-RELATED-RELATED |
| CAI8046455.1 | |
| CAI8046456.1 | N-ACYLNEURAMINATE-9-PHOSPHATASE |
| CAI8046457.1 | |
| CAI8046458.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8046459.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8046460.1 | |
| CAI8046461.1 | SULFATE ADENYLYLTRANSFERASE |
| CAI8046462.1 | ALTRONATE/GALACTARATE DEHYDRATASE |
| CAI8046463.1 | 2,4-DIENOYL-COA REDUCTASE |
| CAI8046465.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8046464.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8046466.1 | CBB3-TYPE CYTOCHROME C OXIDASE SUBUNIT FIXP |
| CAI8046467.1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
| CAI8046468.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8046469.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8046470.1 |
