Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046371.1 | NUCLEOTIDE KINASE |
| CAI8046372.1 | NUCLEOTIDE KINASE |
| CAI8046373.1 | METHIONINE AMINOPEPTIDASE |
| CAI8046374.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI8046375.1 | |
| CAI8046376.1 | RIBOSOMAL PROTEIN L13 |
| CAI8046377.1 | POLYSACCHARIDE DEACETYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G05030) |
| CAI8046378.1 | PHOSPHOMANNOMUTASE 45A |
| CAI8046379.1 | PHOSPHOMANNOMUTASE 45A |
| CAI8046380.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8046383.1 | ADENOSYLHOMOCYSTEINASE |
| CAI8046382.1 | ADENOSYLHOMOCYSTEINASE |
| CAI8046381.1 | ADENOSYLHOMOCYSTEINASE |
| CAI8046384.1 | S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE |
| CAI8046385.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8046386.1 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8046387.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
| CAI8046388.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8046389.1 | 2-METHYLCITRATE DEHYDRATASE-RELATED |
| CAI8046390.1 | |
| CAI8046391.1 | |
| CAI8046392.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8046393.1 | SLR1406 PROTEIN |
| CAI8046394.1 | |
| CAI8046395.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8046396.1 | |
| CAI8046397.1 | |
| CAI8046398.1 | |
| CAI8046399.1 | |
| CAI8046400.1 | |
| CAI8046401.1 | |
| CAI8046402.1 | |
| CAI8046403.1 | COPPER AMINE OXIDASE |
| CAI8046404.1 | ZGC:101858 |
| CAI8046405.1 | RETINOL DEHYDROGENASE-RELATED |
| CAI8046406.1 | CYSTEINE DESULFURASE |
| CAI8046407.1 | |
| CAI8046408.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI8046409.1 | INNER MEMBRANE ABC TRANSPORTER |
| CAI8046410.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8046411.1 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
| CAI8046412.1 | |
| CAI8046413.1 | |
| CAI8046415.1 | |
| CAI8046414.1 | |
| CAI8046416.1 | |
| CAI8046417.1 | |
| CAI8046419.1 | |
| CAI8046418.1 | |
| CAI8046420.1 |
