Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046060.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8046072.1 | |
| CAI8046073.1 | |
| CAI8046074.1 | |
| CAI8046076.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8046075.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8046077.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8046078.1 | |
| CAI8046079.1 | |
| CAI8046080.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8046081.1 | |
| CAI8046082.1 | SLL0198 PROTEIN-RELATED |
| CAI8046083.1 | PROTEIN ABHD11 |
| CAI8046084.1 | ENOYL-COA HYDRATASE |
| CAI8046085.1 | |
| CAI8046086.1 | |
| CAI8046089.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8046088.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8046087.1 | |
| CAI8046090.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8046091.1 | |
| CAI8046092.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8046093.1 | ANKYRIN REPEAT-CONTAINING |
| CAI8046094.1 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| CAI8046095.1 | |
| CAI8046096.1 | |
| CAI8046097.1 | GLUTAMINE SYNTHETASE |
| CAI8046098.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8046099.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| CAI8046100.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8046102.1 | |
| CAI8046101.1 | |
| CAI8046104.1 | NEPHRIN |
| CAI8046103.1 | NEPHRIN |
| CAI8046105.1 | |
| CAI8046106.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8046107.1 | |
| CAI8046108.1 | |
| CAI8046109.1 | |
| CAI8046112.1 | METHIONINE SYNTHASE |
| CAI8046111.1 | METHIONINE SYNTHASE |
| CAI8046110.1 | METHIONINE SYNTHASE |
| CAI8046113.1 | METHIONINE SYNTHASE |
| CAI8046114.1 | |
| CAI8046115.1 | |
| CAI8046116.1 | |
| CAI8046118.1 | |
| CAI8046117.1 | |
| CAI8046119.1 | |
| CAI8046120.1 |
