Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045772.1 | |
| CAI8045771.1 | |
| CAI8045773.1 | MELANOCYTE PROTEIN PMEL 17-RELATED |
| CAI8045777.1 | ENDONUCLEASE V |
| CAI8045778.1 | ENDONUCLEASE V |
| CAI8045776.1 | ENDONUCLEASE V |
| CAI8045775.1 | ENDONUCLEASE V |
| CAI8045774.1 | ENDONUCLEASE V |
| CAI8045779.1 | |
| CAI8045780.1 | DYNEIN LIGHT CHAIN |
| CAI8045781.1 | |
| CAI8045782.1 | |
| CAI8045784.1 | |
| CAI8045783.1 | |
| CAI8045785.1 | |
| CAI8045786.1 | |
| CAI8045787.1 | |
| CAI8045788.1 | |
| CAI8045790.1 | ACETYL-COA CARBOXYLASE, ISOFORM A |
| CAI8045793.1 | ACETYL-COA CARBOXYLASE, ISOFORM A |
| CAI8045794.1 | ACETYL-COA CARBOXYLASE, ISOFORM A |
| CAI8045792.1 | ACETYL-COA CARBOXYLASE, ISOFORM A |
| CAI8045791.1 | ACETYL-COA CARBOXYLASE, ISOFORM A |
| CAI8045795.1 | ACETYL-COA CARBOXYLASE, ISOFORM A |
| CAI8045789.1 | ACETYL-COA CARBOXYLASE, ISOFORM A |
| CAI8045796.1 | |
| CAI8045797.1 | |
| CAI8045798.1 | |
| CAI8045799.1 | |
| CAI8045803.1 | RNA BINDING PROTEIN |
| CAI8045802.1 | RNA BINDING PROTEIN |
| CAI8045801.1 | RNA BINDING PROTEIN |
| CAI8045800.1 | RNA BINDING PROTEIN |
| CAI8045804.1 | |
| CAI8045805.1 | RNA BINDING PROTEIN |
| CAI8045806.1 | RNA BINDING PROTEIN |
| CAI8045807.1 | ACTIVATOR OF BASAL TRANSCRIPTION 1 |
| CAI8045809.1 | RIKEN CDNA 1700001C19 GENE |
| CAI8045808.1 | RIKEN CDNA 1700001C19 GENE |
| CAI8045810.1 | RIKEN CDNA 1700001C19 GENE |
| CAI8045811.1 | UNCHARACTERIZED |
| CAI8045812.1 | |
| CAI8045813.1 | SPLICING FACTOR YJU2 |
| CAI8045817.1 | TRANSALDOLASE |
| CAI8045816.1 | TRANSALDOLASE |
| CAI8045815.1 | TRANSALDOLASE |
| CAI8045814.1 | TRANSALDOLASE |
| CAI8045818.1 | CRYPTOCHROME |
| CAI8045819.1 | CRYPTOCHROME |
| CAI8045820.1 | N-ALPHA-ACETYLTRANSFERASE |
