Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045471.1 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 |
| CAI8045472.1 | TELOMERE LENGTH REGULATION PROTEIN TEL2 FAMILY MEMBER |
| CAI8045476.1 | AUTOPHAGY PROTEIN 12 |
| CAI8045473.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8045475.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8045474.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8045477.1 | DNA-3-METHYLADENINE GLYCOSYLASE |
| CAI8045479.1 | CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED |
| CAI8045478.1 | CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED |
| CAI8045480.1 | CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED |
| CAI8045481.1 | TUBERIN |
| CAI8045482.1 | TUBERIN |
| CAI8045483.1 | |
| CAI8045484.1 | VHS DOMAIN CONTAINING PROTEIN FAMILY |
| CAI8045486.1 | VHS DOMAIN CONTAINING PROTEIN FAMILY |
| CAI8045485.1 | VHS DOMAIN CONTAINING PROTEIN FAMILY |
| CAI8045487.1 | PROTEIN PM1 |
| CAI8045488.1 | CYTOCHROME C OXIDASE SUBUNIT 6B |
| CAI8045490.1 | 80 KDA MCM3-ASSOCIATED PROTEIN |
| CAI8045489.1 | 80 KDA MCM3-ASSOCIATED PROTEIN |
| CAI8045494.1 | |
| CAI8045495.1 | NUCLEAR PROTEIN LOCALIZATION 4 |
| CAI8045493.1 | |
| CAI8045492.1 | NUCLEAR PROTEIN LOCALIZATION 4 |
| CAI8045491.1 | NUCLEAR PROTEIN LOCALIZATION 4 |
| CAI8045496.1 | DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5 |
| CAI8045500.1 | |
| CAI8045499.1 | SPECKLE-TYPE POZ PROTEIN |
| CAI8045497.1 | |
| CAI8045498.1 | SPECKLE-TYPE POZ PROTEIN |
| CAI8045502.1 | WD-40 REPEAT PROTEIN |
| CAI8045501.1 | WD-40 REPEAT PROTEIN |
| CAI8045503.1 | WD-40 REPEAT PROTEIN |
| CAI8045504.1 | UNCHARACTERIZED |
| CAI8045505.1 | UNCHARACTERIZED |
| CAI8045506.1 | UNCHARACTERIZED |
| CAI8045509.1 | |
| CAI8045508.1 | |
| CAI8045507.1 | BASIGIN RELATED |
| CAI8045515.1 | TUBULIN |
| CAI8045514.1 | TUBULIN |
| CAI8045512.1 | TUBULIN |
| CAI8045513.1 | TUBULIN |
| CAI8045511.1 | TUBULIN |
| CAI8045510.1 | TUBULIN |
| CAI8045516.1 | TUBULIN |
| CAI8045517.1 | |
| CAI8045518.1 | TUBULIN |
| CAI8045520.1 | CONTACTIN 5 |
| CAI8045519.1 | BASIGIN RELATED |
