Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045571.1 | |
| CAI8045572.1 | TITIN |
| CAI8045573.1 | TENASCIN |
| CAI8045574.1 | - |
| CAI8045575.1 | |
| CAI8045576.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8045577.1 | CELL CYCLE PROTEIN |
| CAI8045582.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8045581.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8045580.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8045579.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8045578.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8045583.1 | P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE |
| CAI8045584.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI8045585.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI8045586.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI8045587.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8045588.1 | DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED |
| CAI8045589.1 | GH17980P-RELATED |
| CAI8045590.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8045591.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8045592.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8045593.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8045594.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8045595.1 | LD44762P |
| CAI8045596.1 | |
| CAI8045597.1 | PROTEIN SIDEKICK |
| CAI8045598.1 | 3-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED |
| CAI8045599.1 | HOMOACONITASE, MITOCHONDRIAL-RELATED |
| CAI8045600.1 | METHIONINE SYNTHASE |
| CAI8045601.1 | METHIONINE SYNTHASE |
| CAI8045602.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8045603.1 | ELONGATION FACTOR P |
| CAI8045604.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8045605.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8045606.1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
| CAI8045607.1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
| CAI8045608.1 | |
| CAI8045609.1 | TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE |
| CAI8045610.1 | VITAMIN B12-DEPENDENT RIBONUCLEOTIDE REDUCTASE |
| CAI8045611.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8045612.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8045613.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8045614.1 | UVRABC SYSTEM PROTEIN B |
| CAI8045616.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8045615.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8045617.1 | REGULATOR OF RPOS |
| CAI8045618.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8045619.1 | |
| CAI8045620.1 | UNCHARACTERIZED |
