Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045322.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8045323.1 | |
| CAI8045321.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8045324.1 | |
| CAI8045325.1 | |
| CAI8045326.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 58 |
| CAI8045327.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 58 |
| CAI8045328.1 | OS02G0815200 PROTEIN |
| CAI8045329.1 | |
| CAI8045330.1 | INOSITOL 5-PHOSPHATASE |
| CAI8045331.1 | LOQUACIOUS, ISOFORM B |
| CAI8045332.1 | TAXILIN |
| CAI8045333.1 | TAXILIN |
| CAI8045337.1 | SYNAPSE-ASSOCIATED PROTEIN |
| CAI8045335.1 | SYNAPSE-ASSOCIATED PROTEIN |
| CAI8045334.1 | SYNAPSE-ASSOCIATED PROTEIN |
| CAI8045336.1 | SYNAPSE-ASSOCIATED PROTEIN |
| CAI8045338.1 | |
| CAI8045339.1 | SPINAL CORD EXPRESSION PROTEIN 4 |
| CAI8045340.1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
| CAI8045341.1 | RE52028P |
| CAI8045342.1 | UNCHARACTERIZED |
| CAI8045343.1 | |
| CAI8045344.1 | - |
| CAI8045345.1 | POU DOMAIN |
| CAI8045346.1 | |
| CAI8045347.1 | ATP SYNTHASE DELTA CHAIN |
| CAI8045348.1 | |
| CAI8045350.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8045351.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8045349.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8045353.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8045352.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8045355.1 | |
| CAI8045354.1 | |
| CAI8045356.1 | |
| CAI8045357.1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| CAI8045360.1 | |
| CAI8045361.1 | |
| CAI8045359.1 | YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP |
| CAI8045358.1 | YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP |
| CAI8045362.1 | |
| CAI8045363.1 | |
| CAI8045364.1 | SERINE/THREONINE-PROTEIN KINASE TAO |
| CAI8045365.1 | |
| CAI8045367.1 | |
| CAI8045366.1 | |
| CAI8045369.1 | |
| CAI8045368.1 | |
| CAI8045372.1 |
