Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045021.1 | SULFATE TRANSPORTER |
| CAI8045022.1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
| CAI8045023.1 | |
| CAI8045025.1 | |
| CAI8045024.1 | |
| CAI8045026.1 | |
| CAI8045027.1 | BARRIER TO AUTOINTEGRATION FACTOR 2 |
| CAI8045028.1 | |
| CAI8045029.1 | |
| CAI8045030.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8045031.1 | |
| CAI8045032.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8045033.1 | |
| CAI8045034.1 | THIOSULFATE SULFURTRANSFERASE |
| CAI8045037.1 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN |
| CAI8045036.1 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN |
| CAI8045035.1 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN |
| CAI8045038.1 | |
| CAI8045039.1 | |
| CAI8045040.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8045041.1 | AMINOTRANSFERASE |
| CAI8045043.1 | S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE |
| CAI8045042.1 | S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE |
| CAI8045044.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
| CAI8045045.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8045046.1 | GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE |
| CAI8045047.1 | UNDECAPRENYL-PHOSPHATE 4-DEOXY-4-FORMAMIDO-L-ARABINOSE TRANSFERASE-RELATED |
| CAI8045048.1 | CYSTEINE DESULFURASE |
| CAI8045049.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8045050.1 | GH17980P-RELATED |
| CAI8045053.1 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN |
| CAI8045052.1 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN |
| CAI8045051.1 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN |
| CAI8045054.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8045055.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI8045056.1 | |
| CAI8045058.1 | |
| CAI8045057.1 | UBIQUITIN |
| CAI8045059.1 | |
| CAI8045060.1 | |
| CAI8045061.1 | UBIQUITIN |
| CAI8045062.1 | |
| CAI8045063.1 | CYTOKINE RECEPTOR |
| CAI8045074.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8045076.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8045075.1 | ANKYRIN REPEAT FAMILY A |
| CAI8045073.1 | ANKYRIN REPEAT CONTAINING |
| CAI8045072.1 | POTE ANKYRIN DOMAIN |
| CAI8045070.1 | ANKYRIN REPEAT CONTAINING |
| CAI8045069.1 | POTE ANKYRIN DOMAIN |
