Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044772.1 | PROTEIN SIDEKICK |
| CAI8044770.1 | |
| CAI8044771.1 | |
| CAI8044769.1 | |
| CAI8044775.1 | |
| CAI8044776.1 | |
| CAI8044778.1 | |
| CAI8044777.1 | PROTEIN SIDEKICK |
| CAI8044779.1 | |
| CAI8044781.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8044780.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8044782.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8044783.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8044784.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO |
| CAI8044786.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8044785.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8044787.1 | |
| CAI8044791.1 | |
| CAI8044790.1 | |
| CAI8044789.1 | FACIOGENITAL DYSPLASIA PROTEIN |
| CAI8044792.1 | REGULATOR OF G-PROTEIN SIGNALING 3 |
| CAI8044788.1 | |
| CAI8044793.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8044794.1 | RADICAL SAM PROTEINS |
| CAI8044795.1 | RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMO |
| CAI8044796.1 | UPF0331 PROTEIN MJ0127 |
| CAI8044797.1 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
| CAI8044798.1 | ENDORIBONUCLEASE-RELATED |
| CAI8044799.1 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH] |
| CAI8044800.1 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH] |
| CAI8044801.1 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER |
| CAI8044802.1 | |
| CAI8044810.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8044808.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8044806.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8044807.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8044805.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8044809.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8044804.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8044803.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8044811.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8044813.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8044812.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8044814.1 | |
| CAI8044815.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8044816.1 | RADICAL SAM DOMAIN PROTEIN |
| CAI8044817.1 | METHIONINE SULFOXIDE REDUCTASE |
| CAI8044818.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8044819.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI8044820.1 |
